分子生物学
IVD分子诊断
细胞培养与分析
蛋白研究
细胞因子
重组蛋白
抗体
高通量测序建库
病原检测UCF系列
生物医药
工具酶
抑制剂激活剂与常用试剂
仪器
耗材

Comprehensive analysis of prognostic characteristics based on T cell-mediated tumor killing related genes in triple negative breast cancer

Chenyu Zhang, Yanmin Hu, Yongming Han, Peipei Zhao, Baosan Han, Xingjie Hu

Journal:Frontiers in Immunology

IF:7

DOI:10.3389/fimmu.2026.1801004

PMID:42039207

Published:2026-04-10

research field:肿瘤学分子生物学生物信息学精准医学免疫学癌症基因组学

Abstract

Background Triple-negative breast cancer (TNBC) is an aggressive subtype with high malignancy and poor prognosis. Immunotherapy is a promising treatment for TNBC patient. Although T cell-mediated tumor killing related genes (TTKRGs) play critical roles in antitumor immunity, their prognostic value and potential function in TNBC is still unclear. Methods Transcriptomic data from TCGA-BRCA and TTKRGs were curated to determine the prognostic genes in TNBC and a prognostic model was further established. GSE135565 dataset was used to validate the prognostic model. Furthermore, the differences between risk groups were compared through ESTIMATE, clinical correlation, drug sensitivity, immune checkpoint, tumor microenvironment. GSEA and GeneMANIA analysis were performed to explore the potential mechanism. Results Intersection of 1,933 differentially expressed genes (DEGs) and 1,109 TTKRGs yielded 88 candidate genes, and PODN, SEMA7A, GPR34, and COCH were identified as prognostic genes for TNBC. A prognostic model was further successfully established and validated. The model exhibited good predictive performance in both training and validating sets with AUC values all above 0.6. Our studies confirmed the pathological stages were associated with risk scores and there were significant differences in the drug sensitivity, immune checkpoint expression, and tumor microenvironment among different risk groups. The two groups were enriched in pathways of cell cycle and immune regulation and the four prognostic genes were associated with transcription factors such as SP1, MYC, and CTCF. Conclusion We constructed a robust prognostic model based on four T cell-mediated tumor killing (TTK)-related genes. Beyond predicting survival, this signature effectively decodes the immunosuppressive tumor microenvironment (TME) in TNBC, characterized by stromal activation, M2 macrophage polarization, and T cell exhaustion. These findings highlight novel immune evasion mechanisms and provide

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