分子生物学
IVD分子诊断
细胞培养与分析
蛋白研究
细胞因子
重组蛋白
抗体
高通量测序建库
病原检测UCF系列
生物医药
工具酶
抑制剂激活剂与常用试剂
仪器
耗材

PyCoCa:A quantifying tool of carbon content in airway macrophage for assessment the internal dose of particles

Xiaoran Wei, Xiaowen Tang, Nan Liu, Yuansheng Liu, Ge Guan, Yi Liu, Xiaohan Wu, Yingjie Liu, Jingwen Wang, Hanqi Dong, Shengke Wang, Yuxin Zheng

Journal:SCIENCE OF THE TOTAL ENVIRONMENT

IF:10.75

DOI:10.1016/j.scitotenv.2022.158103

PMID:35988636

Published:2022-08-19

research field:分子生物学保护生物学低温保存细胞生物学渔业科学免疫学干细胞研究遗传学水生生物学

Abstract

Given the lack of a comprehensive understanding of the complex metabolism and variable exposure environment, carbon particles in macrophages have become a potentially valuable biomarker to assess the exposure level of atmospheric particles, such as black carbon. However, the tedious and subjective quantification method limits the application of carbon particles as a valid biomarker. Aiming to obtain an accurate carbon particles quantification method, the deep learning and binarization algorithm were implemented to develop a quantitative tool for carbon content in airway macrophage (CCAM), named PyCoCa . Two types of macrophages, normal and foamy appearance, were applied for the development of PyCoCa . In comparison with the traditional methods, PyCoCa significantly improves the identification efficiency for over 100 times. Consistency assessment with the gold standard revealed that PyCoCa exhibits outstanding prediction ability with the Interclass Correlation Coefficient (ICC) values of over 0.80. And a proper fresh dye will enhance the performance of PyCoCa (ICC = 0.89). Subsequent sensitivity analysis confirmed an excellent performance regarding accuracy and robustness of PyCoCa under high/low exposure environments (sensitivity > 0.80). Furthermore, a successful application of our quantitative tool in cohort studies indicates that carbon particles induce macrophage foaming and the foaming decrease the carbon particles internalization in reverse. Our present study provides a robust and efficient tool to accurately quantify the carbon particles loading in macrophage for exposure assessment.

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